2021-05-07 Product Update

Learn more from your genomic data with improved lollipop plots; protein tracks, SnpEff annotation and cDNA vs gDNA view

New Features

  • Genetic Variant Annotation with SnpEff
  • New and improved lollipop plots: add protein domains, toggle between gDNA and cDNA views, visualize SnpEff annotation 

Genetic Variant Annotation + New and Improved Lollipop Plots

HubSpot Video

 

All single nucleotide variant VCF files uploaded to the platform will be automatically processed with SnpEff. Additionally, you can build a pipeline to process your BAM files with Mutect2 and your VCF outputs will be annotated with SnpEff. 

  • Over 30 possible effect types will be visible in your lollipop legend in accordance to industry standards 
  • Use the plotting studio Axes menu to toggle between cDNA and gDNA views
  • While in cDNA view add protein domains to your lollipop plots
  • Zoom in to specific regions of the chromosome 
  • Hover over any SNV in your lollipop to get more information about the annotation


We would love to hear from you! 

See something that could be improved/fixed/changed? Do you have a feature that you would like to see?  Send us your feedback at support@biobox.io. We treat every inquiry like we're getting a package in the mail, so you can guarantee it will be reviewed.